Plant GARDEN
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TOP > About the Species(Nicotiana tabacum var. TN90) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Nicotiana tabacum

CDS Sequence

CDS ID

lcl|NW_015917704.1_cds_XP_016467227.1_59992
CDS Infomation

[gene=LOC107789867] [db_xref=GeneID:107789867] [protein=AMSH-like ubiquitin thioesterase 1 isoform X2] [protein_id=XP_016467227.1] [location=join(3109..3228,4530..4594,5281..5356,5432..5623,6227..6321,6886..6991,8003..8049,8263..8593,8702..8791,8878..8940,9045..9119,9499..9561,10103..10155,10313..10487)] [gbkey=CDS]
Sequence

ATGATGACGCGGTCGTCTTCTGGTCAAATCAACATCGCGGCGCGTACGAAGAAACTCGAT
GTAGATAATCGAATCTCTCTGAGAATTTACTATCGGATCGCTGATAATGTCCTCAAACAG
GCTGACATTTTCCGCTCAGAGGGAGACGTCATAGATTTATATGTCATGCTTCTTAGATTC
TCAAGTTTGGTCTCTGAGACAATACCATGCCATCGAGATTATCGAGCATCACTGCAGAGC
AACAAAATTTATCTAAAAAAGAGATTACTAAATGCTGTGGCTGAGCTTGAGCAACTGAAG
CCAATAGTTCAACAGAAACTCGAGGAGCTAAATAGAAAAAGCACATATCAAGTGAATAAG
GGGAACAATCATCATCAAAATAATCTTTTAGGATTCTCAAGAGAGTTTTATCCAGCCAAT
AAGCAAAACCCAAAGGCTTATGGAACAACTAAGGTAGCAGCACCAGTTGTTCGAGATTTT
GTGTCTCAAGTCCCAAGAACCCAGCAGTTTTTGCTTGTGAACCCAGTAAATGAGCAGATG
CGCCATTTGTCACTTAGTATACCGCGTCCAAAGGATGAAACTCTGACCAGACATTCCATC
CTGGGTCCAAATGGACTTCGAGGACAGTGGCAACCTCCAGCTAGTGACAGAGGGGTGTCT
TATCCAAGTAATGTTGACTTCACTCCTGTTCTAATCCCCAGGCTCCTGCAGCCTCTAGAA
AATGAATCCTTGGATAAAAAGGATGACGTCAGTTCAGAATGTGGAAAACCATGTCTGGAA
TCTACGTTACCGGTAGATAGTGACAAGCCAGTGCTGCGTCTTGAAGAACCTGCTTCATTG
ATTTCCTTTGATACAGAAGAAAGCCCTCTACAATCAGAAATCATTAGACAACCATCTCCT
CCACCTGTTCTTGCAGAGGTACAAGATTTGATGCCACCTGCATCATCTCCAGTCGATGAG
GTGGAATGTGGATTGGTTAAATCATCCCCTGATGGCCTAATCTGCTCTGAAAACCCATTG
CAATTGCACATTTCAACATCTCTGATGGATGCATTCATGAAGCTAGCCAAGTCCAATACT
AACAAAAATCTGGAAACCTGTGGTGTTCTTGCTGGATCACTTAAAAATCGAAGATTTTAT
GTCACAGCTCTCATCATTCCCAAGCAGGAATCAACATCAGATTCGTGTCAAACTACAAAT
GAGGAGGAAATATTTGAAGTTCAAGATAAGCAATCACTGTTTCCTCTTGGGTGGATTCAT
ACGCATCCAACGCAATCATGTTTCATGTCATCCATTGATGTTCATACCCAGTACTCATAT
CAGATCATGTTGCCTGAAGCTATTGCAATTGTAATGGCCCCAAGAGATAGTTCAAGAACT
CATGGAATATTCCGATTGACGAATCCGGGTGGTATGACAGTTATACGACAATGTCCGAGG
CGTGGTTTTCATCCGCATGACCCCCCTCCTGATGGTAGCCCAATTTATAAGCATTGTGCA
GATGTCTATATGGATTCTAAATTGAAGTTCGACGTCATTGATCTTCGATGA

Peptide Sequence

PEP ID

XP_016467227.1
PEP Infomation

PREDICTED: AMSH-like ubiquitin thioesterase 1 isoform X2 [Nicotiana tabacum]
Sequence

MMTRSSSGQINIAARTKKLDVDNRISLRIYYRIADNVLKQADIFRSEGDVIDLYVMLLRF
SSLVSETIPCHRDYRASLQSNKIYLKKRLLNAVAELEQLKPIVQQKLEELNRKSTYQVNK
GNNHHQNNLLGFSREFYPANKQNPKAYGTTKVAAPVVRDFVSQVPRTQQFLLVNPVNEQM
RHLSLSIPRPKDETLTRHSILGPNGLRGQWQPPASDRGVSYPSNVDFTPVLIPRLLQPLE
NESLDKKDDVSSECGKPCLESTLPVDSDKPVLRLEEPASLISFDTEESPLQSEIIRQPSP
PPVLAEVQDLMPPASSPVDEVECGLVKSSPDGLICSENPLQLHISTSLMDAFMKLAKSNT
NKNLETCGVLAGSLKNRRFYVTALIIPKQESTSDSCQTTNEEEIFEVQDKQSLFPLGWIH
THPTQSCFMSSIDVHTQYSYQIMLPEAIAIVMAPRDSSRTHGIFRLTNPGGMTVIRQCPR
RGFHPHDPPPDGSPIYKHCADVYMDSKLKFDVIDLR

Transcript Sequence

Gene sequence data has not been registered.